SNP Profiles of PA 156 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
5._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
6._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
7._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
8._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
9._RUQ_1531
AACCCCCC____CCCCGG_CC_
10._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
11._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
12._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._RUQ_1531
__CCCC__CT_CC__TTCC_
14._RUQ_1531
___CC__CT_______
15._PA156[PER]
___CC____CC___CC_
16._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
17._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
18._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
19._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
20._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
21._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
22._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
23._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
24._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
25._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
26._RUQ_1531
AACC_CCGGAG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCGGCCCCCGTTAATTGGATAACCGG
1._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
2._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
3._GC-05-137-3-39
AACCGG_CCCGTTAATTGGATAACCGG
4._PA_156_[PER]
__GG__CG____ATAA_GG
5._PA_156_[PER]
__GG__CG____ATAA_GG
6._PA_156_[PER]
__GG__CG____ATAA_GG
7._PA_156_[PER]
__GG__CG____ATAA_GG
8._PA_156_[PER]
__GG__CG____ATAA_GG
9._RUQ_1531
__GG__CG____ATAA_GG
10._PA_156_[PER]
__GG__CG____ATAA_GG
11._PA_156_[PER]
__GG__CG____ATAA_GG
12._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
13._RUQ_1531
____CC____GG_AACCGG
14._RUQ_1531
__GGTT_________GG
15._PA156[PER]
____GG_TT__GG_AACCCC
16._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
17._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
18._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
19._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
20._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
21._PA_156_[PER]
__AA__CG____ATAA_CG
22._PA_156_[PER]
__AA__CG____ATAA_CG
23._PA_156_[PER]
__AA__CG____ATAA_CG
24._PA_156_[PER]
__AA__CG____ATAA_CG
25._PA_156_[PER]
__AA__CG____ATAA_CG
26._RUQ_1531
TTCCGGGG_CGAAAAAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGGGGTTAGTTGGCC
1._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
2._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
3._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
4._PA_156_[PER]
AA___CG_AGGG__AG___
5._PA_156_[PER]
AA___CG_AGGG__AG___
6._PA_156_[PER]
AA___CG_AGGG__AG___
7._PA_156_[PER]
AA___CG_AGGG__AG___
8._PA_156_[PER]
AA___CG_AGGG__AG___
9._RUQ_1531
AA___CG_AGGG__AG___
10._PA_156_[PER]
AA___CG_AGGG__AG___
11._PA_156_[PER]
AA___CG_AGGG__AG___
12._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTAGCC
13._RUQ_1531
___GGCGCCAGGG__AGTT__
14._RUQ_1531
____CG_AG____TT__
15._PA156[PER]
___GGCG____TT_TT__
16._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
17._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
18._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
19._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
20._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
21._PA_156_[PER]
AA___CG_AGTT__AG___
22._PA_156_[PER]
AA___CG_AGTT__AG___
23._PA_156_[PER]
AA___CG_AGTT__AG___
24._PA_156_[PER]
AA___CG_AGTT__AG___
25._PA_156_[PER]
AA___CG_AGTT__AG___
26._RUQ_1531
AAAAACGGCGCCAGCCCCAAAGAAGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCTT
1._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
2._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
3._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
4._PA_156_[PER]
__TT_________CC_
5._PA_156_[PER]
__TT_________CC_
6._PA_156_[PER]
__TT_________CC_
7._PA_156_[PER]
__TT_________CC_
8._PA_156_[PER]
__TT_________CC_
9._RUQ_1531
__TT_________CC_
10._PA_156_[PER]
__TT_________CC_
11._PA_156_[PER]
__TT_________CC_
12._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
13._RUQ_1531
GGTT__GG______TT_TT
14._RUQ_1531
____GG_________
15._PA156[PER]
_TT_AA__________
16._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
17._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
18._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
19._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
20._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
21._PA_156_[PER]
__CT_________CT_
22._PA_156_[PER]
__CT_________CT_
23._PA_156_[PER]
__CT_________CT_
24._PA_156_[PER]
__CT_________CT_
25._PA_156_[PER]
__CT_________CT_
26._RUQ_1531
CC_AA_GGAAGG_GGAGCCAAGGAA
 5758596061626364656667686970
_Input profile
AGCCCTCTAAGGGGACAATTGGGGCTCC
1._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
2._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
3._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
4._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
5._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
6._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
7._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
8._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
9._RUQ_1531
_CC_CTAAGG_ACAATTGG___
10._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
11._PA_156_[PER]
___CTAAGG_ACAATTGG___
12._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
13._RUQ_1531
GGCCCTCTAA_GGACAATTGGGG__
14._RUQ_1531
AG______ACAA_GGGG__
15._PA156[PER]
_GGCT_AA_GGACAA____CC
16._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
17._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
18._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
19._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
20._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
21._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
22._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
23._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
24._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
25._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
26._RUQ_1531
AGGGAGAGAAGGGGACAAAACCGG__
 7172737475767778798081828384
_Input profile
AATTCCAGAAAAAGACGGCCATACTTCC
1._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
2._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
3._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
4._PA_156_[PER]
AATT_____ACGG___TTCC
5._PA_156_[PER]
AATT_____ACGG___TTCC
6._PA_156_[PER]
AATT_____ACGG___TTCC
7._PA_156_[PER]
AATT_____ACGG___TTCC
8._PA_156_[PER]
AATT_____ACGG___TTCC
9._RUQ_1531
AATT_____ACGG___TTCC
10._PA_156_[PER]
AATT_____ACGG___TTCC
11._PA_156_[PER]
AATT_____ACGG___TTCC
12._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
13._RUQ_1531
_______ACGG__ACTT_
14._RUQ_1531
AA______ACGG__AC__
15._PA156[PER]
________CC____CC
16._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
17._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
18._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
19._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
20._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
21._PA_156_[PER]
AGCT_____CCGG___CTTT
22._PA_156_[PER]
AGCT_____CCGG___CTTT
23._PA_156_[PER]
AGCT_____CCGG___CTTT
24._PA_156_[PER]
AGCT_____CCGG___CTTT
25._PA_156_[PER]
AGCT_____CCGG___CTTT
26._RUQ_1531
_AACCAGAAAA_ACCCGGATACAAGG
 858687888990919293     
_Input profile
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
5._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
6._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
7._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
8._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
9._RUQ_1531
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
10._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
11._PA_156_[PER]
__AA_CCTTTT__X_XX_XX_XX_XX_X
12._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._RUQ_1531
__AA-CCTT___X_XX_XX_XX_XX_X
14._RUQ_1531
CC__CT_TT___X_XX_XX_XX_XX_X
15._PA156[PER]
_________X_XX_XX_XX_XX_X
16._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
17._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
18._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
19._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
20._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
21._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
22._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
23._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
24._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
25._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
26._RUQ_1531
_AG__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

4._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

9._PA_156_[PER] RUQ_1531

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

11._PA_156_[PER]

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

12._PA_156_[PER] GC-05-137-3-39

99.5 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] RUQ_1531

98.8 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_156_[PER] RUQ_1531

95.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._PA_156_[PER] PA156[PER]

83.3 %
24 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

22._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

23._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER] RUQ_1531

49.4 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240